BANDICOOT 0.2.1.1 (Coot 0.9.8.95)

Display Manager

Maps

0 rnasa-1.8.mtz (FWT/PHWT) 1.50 σ

Contour level

1 rnasa-1.8.mtz (DELFWT/PHDELWT) 3.00 σ

Contour level

Style

Radius (Å) 12 Å

Molecules

0 1SAR_BC · RNase Sa 1.8Å

Bond Colours

Scale Bond Width to Occupancy

Conf A Hue Offset 45°

Alt. Conf. Difference 75°

Slab Width ±15 Å

Refinement Weight 60.0

Run Refmacat (Servalcat C++17 Reciprocal-Space WASM Module)

Input Model, MTZ Columns & Resolution

Coordinates:

MTZ File:

Labels (FP / SIGFP / FREE):

Source / Scattering: Reso (d_min–d_max Å): –

Refinement Cycles, Weighting & Restraints

CG Cycles (--ncycle):

Auto Weight

ADP (B-factor) Mode: ADP Restraint: w_ADP:

Refine XYZ Bulk Solvent Mask Auto-Find Links (SS / Metal / Glyco) Unrestrained

Jelly-Body Restraints σ (Å): d_max (Å):

Reciprocal-Space Refinement Progress (refmacat.wasm) Separate WASM Module (1.5 MB)

Ready to run reciprocal-space maximum-likelihood refinement via Servalcat / Refmacat C++17 WASM (servalcat::Geometry + servalcat::LL + servalcat::CgSolve + Eigen3 + Gemmi).

Refine/Regularize Control

Restraint Weights & Options

Map Weight: 60.0

Include Ramachandran Restraints

Include Torsion Angle Restraints

Include Planarity Restraints

Fixed Atoms in Refinement

Pinned Atoms

No atoms fixed (all active zone atoms mobile)

Delete Item

Choose target item to delete from active model:

Find Waters

Water Peak Search

Map Sigma Cutoff: 2.0 σ

Min Contact Dist (Å):

Max Contact Dist (Å):